Thursday 15 February 2018

Genome organisation


DNA is the genetic material in most of the organisms. This DNA with histone and non-histone protein constitutes the chromatin. The chromatin organized into chromosome during cell division and is composed of two chromatids.
Histones- Histones are main structural proteins found in eukaryotic cells. these are low molecular weight proteins with high proportion of positively charged amino acids (basic amino acids, arginine and lysine). The positive charge helps histones to bind to DNA and play a crucial part in packing long DNA molecules.
There are five different types of histones fall into two categories-
1.      Nucleosomal histones- There are eight molecules of four types of small proteins. These are responsible for coiling of DNA into nucleosome. These are (H2A)2, (H2B)2, (H3)2 and (H4)2 . Each of them is formed of about 102- 135 amino acids. These form the inner core of nucleosome. Nucleosomal histones are very similar in different species. These are present in equimolar amounts, two of each type being present every 200 base pairs, thus forming a histones octamer or core particle.
2.      H1 histones- These are large (of about 200 amino acids) and tissue specific. They are present one per 200 base pairs. These are loosely associated with DNA H1 histones are responsible for packing of nucleosomes into 30 nm fibre.
Functions of Histones-
            Histones of eukaryotic chromosome serve two functions:
1.      These either serve as structural elements and help in coiling and packing of long DNA molecule,
2.      These cover or repress specific segments of DNA, so that these segments are unable to transcribe. Their transcription is possible only by the dissolution of histones in response to certain molecular signals.
Nucleosomes-
Nucleosomes are the fundamental packing units of chromatin and give chromatin the “beads on a string” appearance. Each nucleosome is disc-shaped about 11 nm in diameter. It consists of core particle and a smaller spacer or linear DNA.
a)      Core particle: The core particle consists of the octamer of histones, having two copies each of H2A, H2B, H3 and H4. It is about 11 nm in diameter and 6 nm in height. A strand of DNA having 146 base pairs is tightly wrapped around this core forming two circles (73 nucleotides per turn).
b)     Spacer DNA or linker DNA: It is a small segment of DNA having just four base pairs. One unit of histone H1 is associated with it. There is considerable variation in the length of spacer region in different species varying from base to about 80 base pairs in sea-urchin sperm.
Nucleosome Packing or Formation of Chromatin Fibre
Nucleosomes are packed upon one about one another to form a chromatin fibre or nucleoprotein fibre with a diameter of about 30 nm. It appears to have a beaded appearance. The beads are nucleosomes. These are connected by linker DNA.
            The 11 nm nucleoprotein in fibre represents the first level organization of chromatin and is seen in interphase nucleus. The thick chromatin fibre of 30 nm arises by spiral coiling of thin 11 nm chromatin fibre. It has a solenoid type of ultrastructure and has 6-7 nucleosomes per turn.
            This type of packing requires one molecules of histone H1 per nucleosome. H1 gives polarity to chromatin fibre. The 30 nm fibre is called a solenoid. Inside the cells this solenoid is further folded and packed into the supersolenoid of 300 nm diameter. In mitotic chromosomes, the supersolenoid is further condensed to produce the final shape and diameter of metaphase or anaphase chromosome. In metaphase chromosome, the two daughter DNA molecules are separately folded to produce two sister chromosomes called sister chromatids, held together by a sibgle centromere.